MolNFT v1 · #180619 · protein

Crystal structure of the dib-rm-split protein

7L5M · Lipocalin family protein: “Crystal structure of the dib-rm-split protein”. X-ray diffraction, 2 ligands (NA, SO4), 1 pocket (best druggability 0.68). MolNFT v1 #180619 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7L5M
Type: protein
Length: 151 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipocalin family protein
UniProt: A0A768MZ64
Ligands: NA, SO4
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 13% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipocalin family protein	protein	87	5% helix, 51% strand	A0A768MZ64
B	Lipocalin family protein	protein	64	25% helix, 31% strand	A0A768MZ64

Ligands and binding sites

NA · Sodium ion · metal · chains B
SO4 · Sulfate ion · ion · 3 copies · chains A, B
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	230	0.68	0.84	28	empty

Interfaces

1 interface between chains.

A–B · 1837 Å² buried · 40 hydrogen bonds · protein-protein

Compared structures

7L5M · Crystal Structure of the DiB-RM-split Protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A768MZ64
Elsewhere: RCSB PDB 7L5M · PDBe 7L5M · UniProt A0A768MZ64

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