MolNFT v1 · #180618 · protein

Crystal structure of the dib-rm protein

7L5L · Lipocalin family protein: “Crystal structure of the dib-rm protein”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.75). MolNFT v1 #180618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7L5L
Type: protein
Length: 313 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipocalin family protein
UniProt: A0A768MZ64
Ligands: SO4
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 13% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipocalin family protein	protein	157	13% helix, 43% strand	A0A768MZ64
B	Lipocalin family protein	protein	156	13% helix, 44% strand	A0A768MZ64

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	67	0.75	0.99	20	empty
2	183	0.51	0.78	29	empty

Interfaces

1 interface between chains.

A–B · 881 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

7L5L · Crystal structure of the DiB-RM protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A768MZ64
Elsewhere: RCSB PDB 7L5L · PDBe 7L5L · UniProt A0A768MZ64

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