MolNFT v1 · #180608 · protein

Crystal structure of the photosensory module from xanthomonas campestris bacteriophytochrome xccbphp in the pfr state

7L5A: “Crystal structure of the photosensory module from xanthomonas campestris bacteriophytochrome xccbphp in the…”. X-ray diffraction, 1 ligand (BLA), 3 pockets (best druggability 0.82). MolNFT v1 #180608 on GenesisL1: 3D structure…

PDB: 7L5A
Type: protein
Length: 477 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriophytochrome
UniProt: A0A0H2XCS3
Ligands: BLA
Pockets: 3 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacteriophytochrome	protein	477	32% helix, 21% strand	A0A0H2XCS3

Ligands and binding sites

BLA · Biliverdine IX alpha · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	371	0.82	0.90	43	BLA
2	182	0.61	0.83	19	empty
3	355	0.54	0.74	32	empty

Modifications

Observed in the structure: 1 cofactor (biliverdin attachment).

Compared structures

7L5A · Crystal structure of the photosensory module from Xanthomonas campestris… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2XCS3
Elsewhere: RCSB PDB 7L5A · PDBe 7L5A · UniProt A0A0H2XCS3

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