MolNFT v1 · #180597 · protein
Structure of SARS-cov-2 spike rbd in complex with cyclic peptide
7L4Z: “Structure of SARS-cov-2 spike rbd in complex with cyclic peptide”. X-ray diffraction, 3 ligands (ACE, NAG, NH2). MolNFT v1 #180597 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L4Z
- Type
- protein
- Length
- 1,079 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- ACE, NAG, NH2
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | — | protein | 199 | — | P0DTC2 |
| D | — | protein | 203 | — | P0DTC2 |
| C | — | protein | 202 | — | P0DTC2 |
| E | — | protein | 201 | — | P0DTC2 |
| S, T, R, U, V | — | protein | 15 | — | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 5 copies · chains B, S, D, T, A, R, U, V
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains B, S, D, T, A, C, E
- NH2 · Amino group · ion · 5 copies · chains B, S, T, A, R, U, V
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L4Z · Structure of SARS-CoV-2 spike RBD in complex with cyclic peptide · the same entry in another collection · chain V against V, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7L4Z · PDBe 7L4Z · UniProt P0DTC2
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