MolNFT v1 · #180542 · protein
Binjari virus (binjv)
7L30 · Envelope protein E: “Binjari virus (binjv)”. Electron microscopy, 20 pockets (best druggability 0.80). MolNFT v1 #180542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L30
- Type
- protein
- Length
- 1,902 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelope protein E; Prm protein
- UniProt
- A0A5K6VMX2
- Pockets
- 20 · best druggability 0.80
Structure
electron microscopy · 5 distinct chains · 24% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Envelope protein E | protein | 490 | 20% helix, 32% strand | A0A5K6VMX2 |
| C | Envelope protein E | protein | 488 | 21% helix, 32% strand | A0A5K6VMX2 |
| a | Prm protein | protein | 140 | 30% helix, 17% strand | A0A5K6VMX2 |
| b | Prm protein | protein | 150 | 30% helix, 18% strand | A0A5K6VMX2 |
| c | Prm protein | protein | 144 | 36% helix, 15% strand | A0A5K6VMX2 |
Pockets
20 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 547 | 0.80 | 0.86 | 57 | empty |
| 2 | 740 | 0.73 | 0.78 | 76 | empty |
| 3 | 614 | 0.72 | 0.80 | 58 | empty |
| 4 | 614 | 0.70 | 0.79 | 69 | empty |
| 5 | 482 | 0.69 | 0.80 | 46 | empty |
Interfaces
8 interfaces between chains.
- B–b · 1506 Ų buried · 12 hydrogen bonds · protein-protein
- A–a · 1410 Ų buried · 13 hydrogen bonds · protein-protein
- C–c · 1195 Ų buried · 10 hydrogen bonds · protein-protein
- a–b · 644 Ų buried · 8 hydrogen bonds · protein-protein
- B–a · 263 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 27 disulfide (disulfide).
Compared structures
- 7L30 · Binjari virus (BinJV) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5K6VMX2
- Elsewhere: RCSB PDB 7L30 · PDBe 7L30 · UniProt A0A5K6VMX2
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