MolNFT v1 · #180523 · protein
Cryo-EM structure of ntd-directed neutralizing antibody 5-24 in complex with prefusion SARS-cov-2 spike glycoprotein
7L2F: “Cryo-EM structure of ntd-directed neutralizing antibody 5-24 in complex with prefusion SARS-cov-2 spike…”. Electron microscopy, 2 ligands (NAG, BMA). MolNFT v1 #180523 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L2F
- Type
- protein
- Length
- 3,970 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 1088 | — | P0DTC2 |
| C | — | protein | 1089 | — | P0DTC2 |
| H, G, I | — | protein | 126 | — | — |
| L, J, K | — | protein | 109 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 72 copies · chains A, C, B, H, I, G
- BMA · beta-D-mannopyranose · sugar · 2 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L2F · Cryo-EM structure of NTD-directed neutralizing antibody 5-24 in complex with prefusion… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7L2F · PDBe 7L2F · UniProt P0DTC2
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