MolNFT v1 · #180479 · protein
Crystal structure of the SARS-cov-2 (2019-ncov) main protease in complex with compound 4
7L10 · 3C-like proteinase: “Crystal structure of the SARS-cov-2 (2019-ncov) main protease in complex with compound 4”. X-ray diffraction, 1 ligand (XEY), 2 pockets (best druggability 0.47). MolNFT v1 #180479 on GenesisL1: 3D structure…
- PDB
- 7L10
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C-like proteinase
- EC
- 3.4.22.69
- UniProt
- P0DTD1
- Ligands
- XEY
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3C-like proteinase (EC 3.4.22.69) | protein | 303 | 25% helix, 29% strand | P0DTD1 |
Ligands and binding sites
- XEY · 2-[3-(3,5-dichlorophenyl)-2-oxo[2H-[1,3'-bipyridine]]-5-yl]benzonitrile · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.47 | 0.76 | 27 | empty |
| 2 | 166 | 0.44 | 0.75 | 26 | XEY |
Compared structures
- 7L10 · Crystal structure of the SARS-cov-2 (2019-ncov) main protease in complex with compound 4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7L10 · PDBe 7L10 · UniProt P0DTD1
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