MolNFT v1 · #180452 · protein
Cryo-EM structure of SARS-cov-2 2P S ectodomain bound to one copy of domain-swapped antibody 2G12
7L02: “Cryo-EM structure of SARS-cov-2 2P S ectodomain bound to one copy of domain-swapped antibody 2G12”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #180452 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L02
- Type
- protein
- Length
- 3,776 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 972 | — | P0DTC2 |
| H, M | — | protein | 218 | — | — |
| K | — | protein | 213 | — | — |
| L | — | protein | 211 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 57 copies · chains A, M, B, C
- BMA · beta-D-mannopyranose · sugar · 6 copies · chains M, K, A, H
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains H, M, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L02 · Cryo-EM structure of SARS-CoV-2 2P S ectodomain bound to one copy of domain-swapped… · the same entry in another collection · chain M against M, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7L02 · PDBe 7L02 · UniProt P0DTC2
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