MolNFT v1 · #180358 · protein
Crystal structure of the CD27:CD70 co-stimulatory complex
7KX0: “Crystal structure of the CD27:CD70 co-stimulatory complex”. X-ray diffraction, 4 ligands (NAG, BMA, MAN). MolNFT v1 #180358 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KX0
- Type
- protein
- Length
- 718 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P32970, P26842
- Ligands
- NAG, BMA, MAN, FUC
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 140 | — | P32970 |
| D | — | protein | 100 | — | P26842 |
| E, F | — | protein | 99 | — | P26842 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 15 copies · chains A, E, B, F, C, D
- BMA · beta-D-mannopyranose · sugar · 6 copies
- MAN · alpha-D-mannopyranose · sugar · 6 copies
- FUC · alpha-L-fucopyranose · sugar · 3 copies · chains A, B, C
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KX0 · Crystal structure of the CD27:CD70 co-stimulatory complex · the same entry in another collection · chain F against F, TM-score 1.00
- P32970 · AlphaFold monomer V2.0 prediction for CD70 antigen (P32970) · a predicted model of the same protein · chain B against A, TM-score 0.94
- P26842 · AlphaFold monomer V2.0 prediction for CD27 antigen (P26842) · a predicted model of the same protein · chain E against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32970
- Every structure of UniProt P26842
- Elsewhere: RCSB PDB 7KX0 · PDBe 7KX0 · UniProt P32970 · UniProt P26842
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