MolNFT v1 · #180309 · protein
SARS-cov-2 main protease immature form - fmax library E01 fragment
7KVL: “SARS-cov-2 main protease immature form - fmax library E01 fragment”. X-ray diffraction, 1 ligand (X4P). MolNFT v1 #180309 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KVL
- Type
- protein
- Length
- 605 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- X4P
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 304 | — | P0DTD1 |
| B | — | protein | 301 | — | P0DTD1 |
Ligands and binding sites
- X4P · 2-chloropyridine-4-carboxamide · ligand · chains A
- PEG · Di(hydroxyethyl)ether · additive · 11 copies · chains A, B
- DMS · Dimethyl sulfoxide · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KVL · SARS-CoV-2 Main protease immature form - FMAX Library E01 fragment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7KVL · PDBe 7KVL · UniProt P0DTD1
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