MolNFT v1 · #180296 · protein
Surface glycan-binding protein a from bacteroides uniformis
7KV1 · Susd family protein: “Surface glycan-binding protein a from bacteroides uniformis”. X-ray diffraction, 1 ligand (NCO), 10 pockets (best druggability 0.78). MolNFT v1 #180296 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7KV1
- Type
- protein
- Length
- 913 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd family protein
- UniProt
- A7V1Q0
- Ligands
- NCO
- Pockets
- 10 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd family protein | protein | 456 | 47% helix, 6% strand | A7V1Q0 |
| B | Susd family protein | protein | 457 | 47% helix, 6% strand | A7V1Q0 |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
- BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.78 | 0.98 | 26 | EDO |
| 2 | 751 | 0.78 | 0.82 | 88 | BTB |
| 3 | 101 | 0.77 | 0.98 | 24 | EDO |
| 4 | 102 | 0.42 | 0.77 | 16 | empty |
| 5 | 105 | 0.41 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 650 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 7KV1 · Surface glycan-binding protein A from Bacteroides uniformis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7V1Q0
- Elsewhere: RCSB PDB 7KV1 · PDBe 7KV1 · UniProt A7V1Q0
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