MolNFT v1 · #180271 · RNA
AU1 domain of VEGF readthrough element
7KUB · RNA (60-mer): “AU1 domain of VEGF readthrough element”. Solution nmr, 2 pockets (best druggability 0.63). MolNFT v1 #180271 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KUB
- Type
- RNA
- Length
- 60 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (60-mer)
- Pockets
- 2 · best druggability 0.63
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (60-mer) | rna | 60 | — | — |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 550 | 0.63 | 0.76 | 35 | empty |
| 2 | 246 | 0.51 | 0.76 | 19 | empty |
Compared structures
- 7KUB · Au1 Domain of VEGF Readthrough Element · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7KUB · PDBe 7KUB
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