MolNFT v1 · #180199 · protein

Thermus phage P74-26 large terminase ATPase domain with partially bound ADP

7KS4 · Phage terminase large subunit: “Thermus phage P74-26 large terminase ATPase domain with partially bound ADP”. X-ray diffraction, 3 ligands (ADP, MG, SO4), 1 pocket (best druggability 0.29). MolNFT v1 #180199 on GenesisL1: 3D…

PDB: 7KS4
Type: protein
Length: 252 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phage terminase large subunit
UniProt: A7XXR1
Ligands: ADP, MG, SO4
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Phage terminase large subunit	protein	252	41% helix, 21% strand	A7XXR1

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains B
MG · Magnesium ion · metal · chains B
SO4 · Sulfate ion · ion · 7 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.29	0.74	15	SO4

Compared structures

7KS4 · Thermus Phage P74-26 Large Terminase ATPase domain with partially bound ADP · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7XXR1
Elsewhere: RCSB PDB 7KS4 · PDBe 7KS4 · UniProt A7XXR1

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