MolNFT v1 · #180159 · protein
Crystal structure of SARS-cov-2 NSP3 macrodomain (C2 crystal form, methylated)
7KQW · Non-structural protein 3: “Crystal structure of SARS-cov-2 NSP3 macrodomain (C2 crystal form, methylated)”. X-ray diffraction, 1 pocket (best druggability 0.51). MolNFT v1 #180159 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7KQW
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-structural protein 3
- EC
- 3.4.19.121, 3.4.22.-
- UniProt
- P0DTD1
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-structural protein 3 (EC 3.4.19.121, 3.4.22.-) | protein | 173 | 40% helix, 17% strand | P0DTD1 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 174 | 0.51 | 0.78 | 30 | empty |
Modifications
Observed in the structure: 5 modified (methylation, nonstandard).
Compared structures
- 7KQW · Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, methylated) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7KQW · PDBe 7KQW · UniProt P0DTD1
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