MolNFT v1 · #180021 · protein

Structure of malaysian banana lectin F84T

7KMV · Jacalin-type lectin domain-containing protein: “Structure of malaysian banana lectin F84T”. X-ray diffraction, 1 ligand (SO4), 13 pockets (best druggability 0.75). MolNFT v1 #180021 on GenesisL1: 3D structure, binding sites and…

PDB: 7KMV
Type: protein
Length: 2,245 residues
Chains: 16
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Jacalin-type lectin domain-containing protein
UniProt: M0TZ81
Ligands: SO4
Pockets: 13 · best druggability 0.75

Structure

x-ray diffraction · 3 distinct chains · 0% helix, 70% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, F, G, H, J, L, N	Jacalin-type lectin domain-containing protein	protein	140	0% helix, 70% strand	M0TZ81
D, E, I, K, M, O	Jacalin-type lectin domain-containing protein	protein	141	0% helix, 70% strand	M0TZ81
P	Jacalin-type lectin domain-containing protein	protein	139	0% helix, 71% strand	M0TZ81

Ligands and binding sites

SO4 · Sulfate ion · ion · 20 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	621	0.75	0.81	78	empty
2	669	0.73	0.80	68	empty
3	549	0.73	0.81	76	empty
4	561	0.72	0.80	72	empty
5	61	0.40	0.80	16	empty

Interfaces

23 interfaces between chains.

K–L · 911 Å² buried · 20 hydrogen bonds · protein-protein
E–F · 909 Å² buried · 17 hydrogen bonds · protein-protein
M–N · 893 Å² buried · 19 hydrogen bonds · protein-protein
A–B · 887 Å² buried · 19 hydrogen bonds · protein-protein
I–J · 886 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

7KMV · Structure of Malaysian Banana Lectin F84T · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt M0TZ81
Elsewhere: RCSB PDB 7KMV · PDBe 7KMV · UniProt M0TZ81

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