MolNFT v1 · #180020 · protein
Structure of wt malaysian banana lectin
7KMU · Jacalin-type lectin domain-containing protein: “Structure of wt malaysian banana lectin”. X-ray diffraction, 1 pocket (best druggability 0.27). MolNFT v1 #180020 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KMU
- Type
- protein
- Length
- 281 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Jacalin-type lectin domain-containing protein
- UniProt
- M0TZ81
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 69% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Jacalin-type lectin domain-containing protein | protein | 140 | 0% helix, 68% strand | M0TZ81 |
| B | Jacalin-type lectin domain-containing protein | protein | 141 | 0% helix, 70% strand | M0TZ81 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.27 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 888 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 7KMU · Structure of WT Malaysian Banana Lectin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M0TZ81
- Elsewhere: RCSB PDB 7KMU · PDBe 7KMU · UniProt M0TZ81
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