MolNFT v1 · #180015 · protein
Crystal structure of the GH31 alpha-xylosidase (XAC1773) from xanthomonas citri
7KMP: “Crystal structure of the GH31 alpha-xylosidase (XAC1773) from xanthomonas citri”. X-ray diffraction, 1 ligand (K), 10 pockets (best druggability 0.77). MolNFT v1 #180015 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KMP
- Type
- protein
- Length
- 920 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-xylosidase
- UniProt
- Q8PLM2
- Ligands
- K
- Pockets
- 10 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-xylosidase | protein | 920 | 21% helix, 34% strand | Q8PLM2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.77 | 0.97 | 30 | empty |
| 2 | 218 | 0.75 | 0.90 | 42 | empty |
| 3 | 292 | 0.68 | 0.83 | 49 | GOL |
| 4 | 100 | 0.67 | 0.91 | 29 | GOL |
| 5 | 162 | 0.61 | 0.84 | 25 | empty |
Compared structures
- 7KMP · Crystal structure of the GH31 alpha-xylosidase (Xac1773) from Xanthomonas citri · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PLM2
- Elsewhere: RCSB PDB 7KMP · PDBe 7KMP · UniProt Q8PLM2
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