MolNFT v1 · #180013 · protein
Crystal structure of XAC1772, a GH35 xyloglucan-active beta- galactosidase from xanthomonas citri
7KMN · Beta-galactosidase, GH35 family: “Crystal structure of XAC1772, a GH35 xyloglucan-active beta- galactosidase from xanthomonas citri”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.39). MolNFT v1 #180013 on…
- PDB
- 7KMN
- Type
- protein
- Length
- 511 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-galactosidase, GH35 family
- UniProt
- Q8PLM3
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-galactosidase, GH35 family | protein | 511 | 31% helix, 30% strand | Q8PLM3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.39 | 0.75 | 25 | empty |
| 2 | 95 | 0.38 | 0.75 | 15 | empty |
| 3 | 85 | 0.33 | 0.74 | 17 | empty |
| 4 | 72 | 0.27 | 0.72 | 19 | SO4 |
Compared structures
- 7KMN · Crystal structure of XAC1772, a GH35 xyloglucan-active beta-galactosidase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PLM3
- Elsewhere: RCSB PDB 7KMN · PDBe 7KMN · UniProt Q8PLM3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.