MolNFT v1 · #179996 · protein
APOBEC3B antibody 5G7 fv-clasp
7KM6: “APOBEC3B antibody 5G7 fv-clasp”. X-ray diffraction, 2 ligands (NA, CL). MolNFT v1 #179996 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KM6
- Type
- protein
- Length
- 672 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 165 | — | — |
| H | — | protein | 170 | — | — |
| l | — | protein | 166 | — | — |
| h | — | protein | 171 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains H, l
- CL · Chloride ion · ion · 3 copies · chains L, l
- EDO · 1,2-ethanediol · additive · 10 copies · chains L, H, h, l
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KM6 · APOBEC3B antibody 5G7 Fv-clasp · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7KM6 · PDBe 7KM6
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