MolNFT v1 · #179943 · protein
SARS-cov-2 spike in complex with neutralizing nanobody NB6
7KKK: “SARS-cov-2 spike in complex with neutralizing nanobody NB6”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #179943 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KKK
- Type
- protein
- Length
- 3,360 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | protein | 1002 | — | P0DTC2 |
| B, D, F | — | protein | 118 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 54 copies · chains A, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KKK · SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7KKK · PDBe 7KKK · UniProt P0DTC2
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