MolNFT v1 · #179917 · RNA

CGI121-tRNA complex

7KJU · RNA (75-mer): “CGI121-tRNA complex”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.65). MolNFT v1 #179917 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7KJU
Type: RNA
Length: 75 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (75-mer)
Ligands: MG
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (75-mer)	rna	75	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	643	0.65	0.76	28	MG
2	274	0.49	0.75	21	empty

Compared structures

7KJU · Cgi121-tRNA complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7KJU · PDBe 7KJU

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