MolNFT v1 · #179804 · protein
Crystal structure of synthetic nanobody (SB16) complexes with SARS- cov-2 receptor binding domain
7KGK · Spike protein S1: “Crystal structure of synthetic nanobody (SB16) complexes with SARS- cov-2 receptor binding domain”. X-ray diffraction. MolNFT v1 #179804 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KGK
- Type
- protein
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike protein S1; SB16, sybody-16, synthetic nanobody
- UniProt
- P0DTC2
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spike protein S1 | protein | 195 | 17% helix, 29% strand | P0DTC2 |
| B | SB16, sybody-16, synthetic nanobody | protein | 119 | 0% helix, 52% strand | — |
Interfaces
1 interface between chains.
- A–B · 1073 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 7KGK · Crystal structure of synthetic nanobody (Sb16) complexes with SARS-CoV-2 receptor binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7KGK · PDBe 7KGK · UniProt P0DTC2
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