MolNFT v1 · #179764 · protein
Bundibugyo virus gp (mucin deleted) bound to antibody Fab bdbv-329
7KFE: “Bundibugyo virus gp (mucin deleted) bound to antibody Fab bdbv-329”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #179764 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KFE
- Type
- protein
- Length
- 1,449 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A510C2V9, B8XCN0
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H, G | — | protein | 140 | — | — |
| J, I | — | protein | 108 | — | — |
| A | — | protein | 170 | — | A0A510C2V9 |
| D, E, F | — | protein | 115 | — | B8XCN0 |
| B, C | — | protein | 219 | — | A0A510C2V9 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A, D, E, B, F, C
- MAN · alpha-D-mannopyranose · sugar · 6 copies
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KFE · Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329 · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A510C2V9
- Every structure of UniProt B8XCN0
- Elsewhere: RCSB PDB 7KFE · PDBe 7KFE · UniProt A0A510C2V9 · UniProt B8XCN0
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