MolNFT v1 · #179715 · protein
Crystal structure of streptomyces tokunonesis tokk with hydroxycobalamin, 5'-deoxyadenosine, and methionine
7KDX: “Crystal structure of streptomyces tokunonesis tokk with hydroxycobalamin, 5'-deoxyadenosine, and methionine”. X-ray diffraction, 5 ligands (SF4, 5AD, B12). MolNFT v1 #179715 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7KDX
- Type
- protein
- Length
- 1,324 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A6B9HEI0
- Ligands
- SF4, 5AD, B12, K, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 659 | — | A0A6B9HEI0 |
| B | — | protein | 665 | — | A0A6B9HEI0 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains A, B
- 5AD · 5'-deoxyadenosine · ligand · 2 copies · chains A, B
- B12 · Cobalamin · ligand · 2 copies · chains A, B
- K · Potassium ion · metal · 2 copies
- CL · Chloride ion · ion · 2 copies · chains B
- EDO · 1,2-ethanediol · additive · 21 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KDX · Crystal structure of Streptomyces toku sis TokK with hydroxycobalamin, 5'-deoxyadenosine… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6B9HEI0
- Elsewhere: RCSB PDB 7KDX · PDBe 7KDX · UniProt A0A6B9HEI0
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