MolNFT v1 · #179683 · RNA
Apo structure of the thf riboswitch aptamer domain
7KD1 · Tetrahydrofolate riboswitch aptamer domain: “Apo structure of the thf riboswitch aptamer domain”. X-ray diffraction, 2 ligands (MG, SO4), 2 pockets (best druggability 0.62). MolNFT v1 #179683 on GenesisL1: 3D structure, binding…
- PDB
- 7KD1
- Type
- RNA
- Length
- 89 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tetrahydrofolate riboswitch aptamer domain
- Ligands
- MG, SO4
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tetrahydrofolate riboswitch aptamer domain | rna | 89 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 643 | 0.62 | 0.74 | 41 | empty |
| 2 | 216 | 0.51 | 0.77 | 20 | empty |
Compared structures
- 7KD1 · Apo structure of the THF riboswitch aptamer domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7KD1 · PDBe 7KD1
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