MolNFT v1 · #179630 · protein
Ricin bound to vhh antibody V5E1
7KBI: “Ricin bound to vhh antibody V5E1”. X-ray diffraction, 3 ligands (NAG, BMA, CL). MolNFT v1 #179630 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KBI
- Type
- protein
- Length
- 641 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P02879
- Ligands
- NAG, BMA, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 259 | — | P02879 |
| B | — | protein | 256 | — | P02879 |
| C | — | protein | 126 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar
- CL · Chloride ion · ion · 4 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KBI · Ricin bound to VHH antibody V5E1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02879
- Elsewhere: RCSB PDB 7KBI · PDBe 7KBI · UniProt P02879
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.