MolNFT v1 · #179550 · protein
Structure of the SARS-cov-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C135
7K8Z: “Structure of the SARS-cov-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C135”. Electron microscopy, 4 ligands (NAG, BMA, MAN). MolNFT v1 #179550 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7K8Z
- Type
- protein
- Length
- 3,335 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA, MAN, FUC
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 967 | — | P0DTC2 |
| B | — | protein | 949 | — | P0DTC2 |
| C | — | protein | 972 | — | P0DTC2 |
| H | — | protein | 118 | — | — |
| L, N | — | protein | 106 | — | — |
| M | — | protein | 117 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 63 copies · chains A, C, B
- BMA · beta-D-mannopyranose · sugar · 2 copies
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7K8Z · Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7K8Z · PDBe 7K8Z · UniProt P0DTC2
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