MolNFT v1 · #179370 · protein
Cellular retinol-binding protein 2 (CRBP2) in complex with 2- lauroylglycerol
7K3I: “Cellular retinol-binding protein 2 (CRBP2) in complex with 2- lauroylglycerol”. X-ray diffraction, 1 ligand (VLZ), 1 pocket (best druggability 0.83). MolNFT v1 #179370 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7K3I
- Type
- protein
- Length
- 138 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Retinol-binding protein 2
- UniProt
- P50120
- Ligands
- VLZ
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Retinol-binding protein 2 | protein | 138 | 10% helix, 53% strand | P50120 |
Ligands and binding sites
- VLZ · 1,3-dihydroxypropan-2-yl dodecanoate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.83 | 0.96 | 34 | VLZ |
Compared structures
- 7K3I · Cellular retinol-binding protein 2 (CRBP2) in complex with 2-lauroylglycerol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50120
- Elsewhere: RCSB PDB 7K3I · PDBe 7K3I · UniProt P50120
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