MolNFT v1 · #179161 · protein
Crystal structure of N-phenylalanine peptoid-modified collagen triple helix
7JX5 · Collagen mimetic peptide with N-phenylalanine guest: “Crystal structure of N-phenylalanine peptoid-modified collagen triple helix”. X-ray diffraction, 3 ligands (ACE, 04Q, NH2). MolNFT v1 #179161 on GenesisL1: 3D structure, binding…
- PDB
- 7JX5
- Type
- protein
- Length
- 120 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen mimetic peptide with N-phenylalanine guest
- Ligands
- ACE, 04Q, NH2
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, A, B, E, F, D | Collagen mimetic peptide with N-phenylalanine guest | protein | 20 | 0% helix, 0% strand | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 6 copies · chains C, A, B, E, F, D
- 04Q · N-benzylglycine · ligand · 6 copies · chains C, A, B, E, F, D
- NH2 · Amino group · ion · 6 copies · chains C, B, A, E, F, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
15 interfaces between chains.
- A–B · 647 Ų buried · 5 hydrogen bonds · protein-protein
- E–F · 639 Ų buried · 5 hydrogen bonds · protein-protein
- E–D · 636 Ų buried · 5 hydrogen bonds · protein-protein
- C–B · 635 Ų buried · 5 hydrogen bonds · protein-protein
- C–A · 590 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 42 modified, 18 covalent (hydroxylation, covalent ligand).
Compared structures
- 7JX5 · Crystal Structure of N-Phenylalanine Peptoid-modified Collagen Triple Helix · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7JX5 · PDBe 7JX5
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