MolNFT v1 · #179050 · protein
Cytidine deaminase T6S toxin from pseudomonas syringae
7JTU · Ssda: “Cytidine deaminase T6S toxin from pseudomonas syringae”. X-ray diffraction, 4 pockets (best druggability 0.57). MolNFT v1 #179050 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JTU
- Type
- protein
- Length
- 344 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ssda; Ssdai
- UniProt
- A0A0Q0DAS4, A0A3M2XVH3
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ssda | protein | 151 | 39% helix, 15% strand | A0A0Q0DAS4 |
| B | Ssdai | protein | 193 | 73% helix, 0% strand | A0A3M2XVH3 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.57 | 0.86 | 18 | empty |
| 2 | 90 | 0.40 | 0.78 | 21 | empty |
| 3 | 67 | 0.30 | 0.74 | 16 | empty |
| 4 | 55 | 0.29 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1382 Ų buried · 27 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 7JTU · Cytidine deaminase T6S toxin from Pseudomonas syringae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0Q0DAS4
- Every structure of UniProt A0A3M2XVH3
- Elsewhere: RCSB PDB 7JTU · PDBe 7JTU · UniProt A0A0Q0DAS4 · UniProt A0A3M2XVH3
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