GL1X · GenesisL1 explorer

MolNFT v1 · #179028 · protein

Mycobacterium tuberculosis dethiobiotin synthetase in complex with tetrazole 2

7JT6: “Mycobacterium tuberculosis dethiobiotin synthetase in complex with tetrazole 2”. X-ray diffraction, 2 ligands (VJG, SO4). MolNFT v1 #179028 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7JT6
Type
protein
Length
906 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P9WPQ5
Ligands
VJG, SO4

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein227—P9WPQ5
B, D—protein226—P9WPQ5
C—protein227—P9WPQ5

Ligands and binding sites

  • VJG · {(1S,2R)-2-[4-(1H-tetrazol-5-yl)benzene-1-carbonyl]cyclopentyl}acetic acid · ligand · 4 copies · chains A, B, C, D
  • SO4 · Sulfate ion · ion · 10 copies · chains A, B, C, D
  • GOL · Glycerol · additive · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7JT6 · Mycobacterium tuberculosis dethiobiotin synthetase in complex with Tetrazole 2 · the same entry in another collection · chain B against B, TM-score 1.00
  • P9WPQ5 · AlphaFold monomer V2.0 prediction for dethiobiotin synthetase biod (P9WPQ5) · a predicted model of the same protein · chain D against A, TM-score 0.99

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