MolNFT v1 · #178969 · protein

Phospholipase D engineered mutant in complex with phosphate

7JRC: “Phospholipase D engineered mutant in complex with phosphate”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #178969 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7JRC
Type: protein
Length: 501 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q53728
Ligands: PO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	501	—	Q53728

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7JRC · Phospholipase D engineered mutant in complex with phosphate · the same entry in another collection · chain A against A, TM-score 1.00
Q53728 · AlphaFold monomer V2.0 prediction for phospholipase D (Q53728) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53728
Elsewhere: RCSB PDB 7JRC · PDBe 7JRC · UniProt Q53728

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