MolNFT v1 · #178777 · DNA
Self-assembly of a 3D DNA crystal lattice (4X6 scramble duplex version) containing the J21 immobile holliday junction with R3 symmetry
7JLC · DNA (5'- D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*TP*GP*…: “Self-assembly of a 3D DNA crystal lattice (4X6 scramble duplex version) containing the J21 immobile holliday…”. X-ray diffraction. MolNFT v1 #178777 on GenesisL1: 3D…
- PDB
- 7JLC
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*TP*GP*GP*AP*CP*TP*C)- 3'); DNA…
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (5'- D(*GP*AP*AP*CP*GP*AP*CP*AP*CP*TP*GP*AP*CP*GP*TP*GP*GP*AP*CP*TP*C)- 3') | dna | 21 | — | — |
| C | DNA (5'-D(*TP*CP*GP*AP*GP*TP*CP*C)-3') | dna | 8 | — | — |
| D | DNA (5'-D(P*GP*TP*GP*TP*CP*GP*T)-3') | dna | 7 | — | — |
| A | DNA (5'-D(P*AP*CP*GP*TP*CP*A)-3') | dna | 6 | — | — |
Interfaces
5 interfaces between chains.
- B–D · 321 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- B–A · 292 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- B–C · 259 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- D–A · 96 Ų buried · 1 hydrogen bond · nucleic-nucleic
- C–A · 85 Ų buried · 6 hydrogen bonds · nucleic-nucleic
Compared structures
- 7JLC · Self-assembly of a 3D DNA crystal lattice (4x6 scramble duplex version) containing the… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7JLC · PDBe 7JLC
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.