MolNFT v1 · #178710 · protein
Crystal structure of the zint-like domain of streptococcus pneumoniae adca in the apo form
7JJA · Zinc-binding lipoprotein adca: “Crystal structure of the zint-like domain of streptococcus pneumoniae adca in the apo form”. X-ray diffraction, 2 ligands (EDT, NA), 1 pocket (best druggability 0.70). MolNFT v1 #178710 on GenesisL1…
- PDB
- 7JJA
- Type
- protein
- Length
- 180 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zinc-binding lipoprotein adca
- UniProt
- Q8CWN2
- Ligands
- EDT, NA
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Zinc-binding lipoprotein adca | protein | 180 | 30% helix, 32% strand | Q8CWN2 |
Ligands and binding sites
- EDT · {[-(bis-carboxymethyl-amino)-ethyl]-carboxymethyl-amino}-acetic acid · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 614 | 0.70 | 0.78 | 49 | EDT |
Compared structures
- 7JJA · Crystal structure of the ZinT-like domain of Streptococcus pneumoniae AdcA in the apo form · the same entry in another collection · chain A against A, TM-score 1.00
- Q8CWN2 · AlphaFold monomer V2.0 prediction for zinc-binding lipoprotein adca (Q8CWN2) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8CWN2
- Elsewhere: RCSB PDB 7JJA · PDBe 7JJA · UniProt Q8CWN2
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