MolNFT v1 · #178697 · protein
The crystal structure of papain-like protease of SARS cov-2 in complex with PLP_SNYDER530 inhibitor
7JIW: “The crystal structure of papain-like protease of SARS cov-2 in complex with PLP_SNYDER530 inhibitor”. X-ray diffraction, 3 ligands (VBY, ZN, CL). MolNFT v1 #178697 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7JIW
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC1
- Ligands
- VBY, ZN, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 305 | — | P0DTC1 |
Ligands and binding sites
- VBY · 5-(acryloylamino)-2-methyl-N-[(1R)-1-(naphthalen-1-yl) ethyl]benzamide · ligand · chains A
- ZN · Zinc ion · metal · 4 copies · chains A
- CL · Chloride ion · ion · 4 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7JIW · The crystal structure of Papain-Like Protease of SARS CoV-2 in complex with PLP_Snyder530… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC1
- Elsewhere: RCSB PDB 7JIW · PDBe 7JIW · UniProt P0DTC1
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