MolNFT v1 · #178589 · protein

The structure of the CBM32-1, CBM32-2, and M60 catalytic domains from clostridium perfringens zmpb

7JFS · F5/8 type C domain protein: “The structure of the CBM32-1, CBM32-2, and M60 catalytic domains from clostridium perfringens zmpb”. X-ray diffraction, 1 ligand (ZN), 7 pockets (best druggability 0.56). MolNFT v1 #178589 on GenesisL1…

PDB: 7JFS
Type: protein
Length: 958 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: F5/8 type C domain protein
EC: 3.-.-.-
UniProt: A0A0H2YN38
Ligands: ZN
Pockets: 7 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	F5/8 type C domain protein (EC 3.-.-.-)	protein	958	29% helix, 28% strand	A0A0H2YN38

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	267	0.56	0.77	30	empty
2	156	0.47	0.76	29	empty
3	72	0.43	0.81	17	empty
4	89	0.41	0.78	12	empty
5	96	0.40	0.76	17	empty

Compared structures

7JFS · The structure of the CBM32-1, CBM32-2, and M60 catalytic domains from Clostridium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2YN38
Elsewhere: RCSB PDB 7JFS · PDBe 7JFS · UniProt A0A0H2YN38

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