MolNFT v1 · #178531 · protein
Kpacka (pduw) native structure
7FJ7 · Probable propionate kinase: “Kpacka (pduw) native structure”. X-ray diffraction, 6 pockets (best druggability 0.84). MolNFT v1 #178531 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7FJ7
- Type
- protein
- Length
- 782 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable propionate kinase
- EC
- 2.7.2.15
- UniProt
- A0A0H3GUQ7
- Pockets
- 6 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable propionate kinase (EC 2.7.2.15) | protein | 395 | 43% helix, 22% strand | A0A0H3GUQ7 |
| B | Probable propionate kinase (EC 2.7.2.15) | protein | 387 | 44% helix, 20% strand | A0A0H3GUQ7 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 411 | 0.84 | 0.93 | 61 | empty |
| 2 | 440 | 0.62 | 0.76 | 52 | empty |
| 3 | 438 | 0.61 | 0.76 | 46 | empty |
| 4 | 76 | 0.43 | 0.80 | 19 | empty |
| 5 | 58 | 0.40 | 0.81 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 3081 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 7FJ7 · KpAckA (PduW) native structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3GUQ7
- Elsewhere: RCSB PDB 7FJ7 · PDBe 7FJ7 · UniProt A0A0H3GUQ7
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