MolNFT v1 · #178515 · protein
The cryo-EM structure of the NTD2 from the X. laevis NUP358
7FIL · NUP358 complex, clamps: “The cryo-EM structure of the NTD2 from the X. laevis NUP358”. Electron microscopy, 7 pockets (best druggability 0.56). MolNFT v1 #178515 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7FIL
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NUP358 complex, clamps
- UniProt
- A0A1L8HGL2
- Pockets
- 7 · best druggability 0.56
Structure
electron microscopy · 1 distinct chain · 60% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NUP358 complex, clamps | protein | 504 | 60% helix, 0% strand | A0A1L8HGL2 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.56 | 0.77 | 39 | empty |
| 2 | 172 | 0.55 | 0.80 | 28 | empty |
| 3 | 131 | 0.45 | 0.77 | 14 | empty |
| 4 | 148 | 0.44 | 0.75 | 20 | empty |
| 5 | 85 | 0.41 | 0.78 | 13 | empty |
Compared structures
- 7FIL · The cryo-EM structure of the NTD2 from the X. laevis Nup358 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1L8HGL2
- Elsewhere: RCSB PDB 7FIL · PDBe 7FIL · UniProt A0A1L8HGL2
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