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MolNFT v1 · #178495 · protein

Crystal structure of multi-functional polysaccharide lyase SMLT1473 (wt) from stenotrophomonas maltophilia (strain K279A) in mana bound form at pH-5.0

7FI0: “Crystal structure of multi-functional polysaccharide lyase SMLT1473 (wt) from stenotrophomonas maltophilia…”. X-ray diffraction, 2 ligands (BEM, SO4), 1 pocket (best druggability 0.61). MolNFT v1 #178495 on GenesisL1: 3D structure…

PDB
7FI0
Type
protein
Length
308 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Polysaccharide lyase
EC
4.2.2.-
UniProt
B2FHL8
Ligands
BEM, SO4
Pockets
1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 3% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
APolysaccharide lyase (EC 4.2.2.-)protein30864% helix, 3% strandB2FHL8

Ligands and binding sites

  • BEM · beta-D-mannopyranuronic acid · sugar · 3 copies · chains A
  • SO4 · Sulfate ion · ion · chains A
  • PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14890.610.7549BEM

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

  • 7FI0 · Crystal structure of Multi-functional Polysaccharide lyase Smlt1473 (WT) from… · the same entry in another collection · chain A against A, TM-score 1.00
  • B2FHL8 · AlphaFold monomer V2.0 prediction for polysaccharide lyase (B2FHL8) · a predicted model of the same protein · chain A against A, TM-score 0.99

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