MolNFT v1 · #178302 · protein
Crystal structure of SARS-cov-2 receptor binding domain N501Y mutant in complex with neutralizing nanobody 20G6
7FBK: “Crystal structure of SARS-cov-2 receptor binding domain N501Y mutant in complex with neutralizing nanobody…”. X-ray diffraction, 2 ligands (NAG, FUC). MolNFT v1 #178302 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7FBK
- Type
- protein
- Length
- 618 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 196 | — | P0DTC2 |
| C, D | — | protein | 113 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · 2 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7FBK · Crystal structure of SARS-CoV-2 receptor binding domain N501Y mutant in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7FBK · PDBe 7FBK · UniProt P0DTC2
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