MolNFT v1 · #178301 · protein
Crystal structure of SARS-cov-2 receptor binding domain in complex with neutralizing nanobody 17F6
7FBJ: “Crystal structure of SARS-cov-2 receptor binding domain in complex with neutralizing nanobody 17F6”. X-ray diffraction, 2 ligands (NAG, BMA). MolNFT v1 #178301 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7FBJ
- Type
- protein
- Length
- 2,480 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 199 | — | P0DTC2 |
| B | — | protein | 111 | — | — |
| C, O | — | protein | 197 | — | P0DTC2 |
| D, L | — | protein | 112 | — | — |
| E | — | protein | 195 | — | P0DTC2 |
| F | — | protein | 113 | — | — |
| G, I, K, M | — | protein | 198 | — | P0DTC2 |
| H, J | — | protein | 114 | — | — |
| N | — | protein | 113 | — | — |
| P | — | protein | 111 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 13 copies · chains G, I, K, M, O, A, C, E
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7FBJ · Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7FBJ · PDBe 7FBJ · UniProt P0DTC2
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