MolNFT v1 · #1783 · DNA
Intramolecular triplex, NMR, 10 structures
1BCB · DNA (5'-D(*AP*GP*AP*AP*GP*A)-3'): “Intramolecular triplex, NMR, 10 structures”. Solution nmr. MolNFT v1 #1783 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1BCB
- Type
- DNA
- Length
- 18 nucleotides
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*AP*GP*AP*AP*GP*A)-3'); DNA (5'-D(*TP*CP*TP*TP*CP*T)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*AP*GP*AP*AP*GP*A)-3') | dna | 6 | — | — |
| B, C | DNA (5'-D(*TP*CP*TP*TP*CP*T)-3') | dna | 6 | — | — |
Interfaces
3 interfaces between chains.
- A–C · 357 Ų buried · 29 hydrogen bonds · nucleic-nucleic
- A–B · 262 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- B–C · 130 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 1BCB · Intramolecular triplex, NMR, 10 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1BCB · PDBe 1BCB
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