MolNFT v1 · #178067 · protein + RNA
Crystal structure of human YBX2 csd in complex with M5C RNA in space group P62
7F3L · Y-box-binding protein 2: “Crystal structure of human YBX2 csd in complex with M5C RNA in space group P62”. X-ray diffraction. MolNFT v1 #178067 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F3L
- Type
- protein + RNA
- Length
- 79 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Y-box-binding protein 2; RNA (5'-R(P*CP*AP*UP*(5MC))-3')
- UniProt
- Q9Y2T7
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Y-box-binding protein 2 | protein | 75 | 4% helix, 57% strand | Q9Y2T7 |
| B | RNA (5'-R(P*CP*AP*UP*(5MC))-3') | rna | 4 | — | — |
Interfaces
1 interface between chains.
- A–B · 565 Ų buried · 11 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 7F3L · Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y2T7 · AlphaFold monomer V2.0 prediction for Y-box-binding protein 2 (Q9Y2T7) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y2T7
- Elsewhere: RCSB PDB 7F3L · PDBe 7F3L · UniProt Q9Y2T7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.