MolNFT v1 · #178041 · protein
Crystal structure of PDE4D catalytic domain complexed with compound 18D
7F2M: “Crystal structure of PDE4D catalytic domain complexed with compound 18D”. X-ray diffraction, 3 ligands (1GF, ZN, MG). MolNFT v1 #178041 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7F2M
- Type
- protein
- Length
- 648 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q08499
- Ligands
- 1GF, ZN, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 325 | — | Q08499 |
| B | — | protein | 323 | — | Q08499 |
Ligands and binding sites
- 1GF · (~{Z})-4-[9-[(4-fluorophenyl)methoxy]-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-enyl)-6-oxidanylidene-pyrano[3,2-b]xanthen-5-yl]oxybut-2-enoic acid · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7F2M · Crystal structure of PDE4D catalytic domain complexed with compound 18d · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08499
- Elsewhere: RCSB PDB 7F2M · PDBe 7F2M · UniProt Q08499
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