MolNFT v1 · #177957 · protein

Crystal structure of SPD_0310

7F00 · UPF0371 protein SPRM200_0309: “Crystal structure of SPD_0310”. X-ray diffraction, 1 ligand (SO4), 10 pockets (best druggability 0.71). MolNFT v1 #177957 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7F00
Type: protein
Length: 945 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0371 protein SPRM200_0309
UniProt: A0A2U3RY31
Ligands: SO4
Pockets: 10 · best druggability 0.71

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0371 protein SPRM200_0309	protein	477	49% helix, 13% strand	A0A2U3RY31
B	UPF0371 protein SPRM200_0309	protein	468	50% helix, 13% strand	A0A2U3RY31

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	541	0.71	0.80	65	SO4
2	446	0.70	0.81	61	SO4
3	648	0.66	0.75	67	empty
4	512	0.64	0.76	65	empty
5	353	0.61	0.77	48	empty

Interfaces

1 interface between chains.

A–B · 1862 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

7F00 · Crystal structure of SPD_0310 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2U3RY31
Elsewhere: RCSB PDB 7F00 · PDBe 7F00 · UniProt A0A2U3RY31

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