MolNFT v1 · #177946 · protein
Rice L-galactose dehydrogenase (holo form)
7EZL: “Rice L-galactose dehydrogenase (holo form)”. X-ray diffraction, 2 ligands (NAD, MG), 2 pockets (best druggability 0.74). MolNFT v1 #177946 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EZL
- Type
- protein
- Length
- 318 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-galactose dehydrogenase
- UniProt
- Q2QQV2
- Ligands
- NAD, MG
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-galactose dehydrogenase | protein | 318 | 44% helix, 16% strand | Q2QQV2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 414 | 0.74 | 0.84 | 52 | NAD |
| 2 | 51 | 0.33 | 0.77 | 10 | empty |
Compared structures
- 7EZL · Rice L-galactose dehydrogenase (holo form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2QQV2
- Elsewhere: RCSB PDB 7EZL · PDBe 7EZL · UniProt Q2QQV2
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