MolNFT v1 · #177924 · protein
Crystal structure of vibrio cholerae ppnp
7EYM · PYRIMIDINE/PURINE nucleoside phosphorylase: “Crystal structure of vibrio cholerae ppnp”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #177924 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EYM
- Type
- protein
- Length
- 190 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PYRIMIDINE/PURINE nucleoside phosphorylase
- UniProt
- A0A0H6V0E6
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PYRIMIDINE/PURINE nucleoside phosphorylase | protein | 96 | 3% helix, 63% strand | A0A0H6V0E6 |
| B | PYRIMIDINE/PURINE nucleoside phosphorylase | protein | 94 | 3% helix, 64% strand | A0A0H6V0E6 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 159 | 0.51 | 0.78 | 23 | empty |
| 2 | 126 | 0.48 | 0.78 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1122 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7EYM · Crystal structure of Vibrio cholerae ppnP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H6V0E6
- Elsewhere: RCSB PDB 7EYM · PDBe 7EYM · UniProt A0A0H6V0E6
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