MolNFT v1 · #177744 · protein
Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from fusarium oxysporum 12S, N247A N-glycan free form
7ESL: “Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from fusarium oxysporum 12S, N247A N-glycan…”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.73). MolNFT v1 #177744 on GenesisL1: 3D structure…
- PDB
- 7ESL
- Type
- protein
- Length
- 419 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-rhamnose-alpha-1,4-D-glucuronate lyase
- EC
- 4.2.2.-
- Ligands
- NA
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-rhamnose-alpha-1,4-D-glucuronate lyase (EC 4.2.2.-) | protein | 419 | 5% helix, 47% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.73 | 0.86 | 49 | empty |
| 2 | 173 | 0.47 | 0.76 | 23 | empty |
Compared structures
- 7ESL · Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7ESL · PDBe 7ESL
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.