MolNFT v1 · #177695 · protein
Crystal structure of capsid P domain of norovirus GI.3 dsv
7EQS: “Crystal structure of capsid P domain of norovirus GI.3 dsv”. X-ray diffraction, 4 pockets (best druggability 0.83). MolNFT v1 #177695 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7EQS
- Type
- protein
- Length
- 601 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid P domain
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid P domain | protein | 304 | 9% helix, 31% strand | — |
| B | Capsid P domain | protein | 297 | 8% helix, 31% strand | — |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.83 | 0.90 | 62 | empty |
| 2 | 60 | 0.72 | 0.98 | 20 | empty |
| 3 | 150 | 0.42 | 0.75 | 21 | empty |
| 4 | 147 | 0.41 | 0.74 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 1556 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7EQS · Crystal structure of capsid P domain of norovirus GI.3 DSV · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EQS · PDBe 7EQS
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