MolNFT v1 · #177683 · protein

Crystal structure of the mini-centralspindlin complex

7EQC · Cytokinesis defect: “Crystal structure of the mini-centralspindlin complex”. X-ray diffraction, 8 pockets (best druggability 0.76). MolNFT v1 #177683 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7EQC
Type: protein
Length: 810 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytokinesis defect; Kinesin-like protein
UniProt: Q9XUS9, G5EG83
Pockets: 8 · best druggability 0.76

Structure

x-ray diffraction · 8 distinct chains · 80% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Cytokinesis defect	protein	101	89% helix, 0% strand	Q9XUS9
C	Cytokinesis defect	protein	106	88% helix, 0% strand	Q9XUS9
J	Kinesin-like protein	protein	109	68% helix, 0% strand	G5EG83
F	Kinesin-like protein	protein	98	73% helix, 0% strand	G5EG83
D	Cytokinesis defect	protein	101	85% helix, 0% strand	Q9XUS9
E	Kinesin-like protein	protein	81	79% helix, 0% strand	G5EG83
G	Cytokinesis defect	protein	107	90% helix, 0% strand	Q9XUS9
I	Kinesin-like protein	protein	107	70% helix, 0% strand	G5EG83

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1116	0.76	0.79	93	empty
2	395	0.67	0.80	47	empty
3	535	0.65	0.76	53	empty
4	140	0.50	0.79	26	empty
5	123	0.40	0.74	15	empty

Interfaces

21 interfaces between chains.

B–C · 2303 Å² buried · 10 hydrogen bonds · protein-protein
D–G · 2301 Å² buried · 8 hydrogen bonds · protein-protein
J–F · 2052 Å² buried · 23 hydrogen bonds · protein-protein
E–I · 1885 Å² buried · 23 hydrogen bonds · protein-protein
J–G · 1401 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

7EQC · Crystal structure of the mini-centralspindlin complex · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9XUS9
Every structure of UniProt G5EG83
Elsewhere: RCSB PDB 7EQC · PDBe 7EQC · UniProt Q9XUS9 · UniProt G5EG83

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